- Yabe, H., 1902:
- Note on three Upper Cretaceous ammonites from Japan, outside of Hokkaido.
- Journal of the Geological Society of Tokyo, vol. 9, no. 100, pp. 1–7, pl. 1.
-

- Yabe, H., 1903a:
- On a Fusulina-limestone with Helicoprion in Japan.
- Journal of the Geological Society of Tokyo, vol. 10, no. 113, pp. 1–13, pl. 2.
-

- Yabe, H., 1903b:
- Cretaceous Cephalopoda from the Hokkaido. Part 1. Lytoceras, Gaudryceras and Tetragonites.
- Journal of the College of Science, Imperial University of Tokyo, vol. 18, art. 2, pp. 1–55, pls. 1–7.
- Yabe, H., 1904:
- Cretaceous Cephalopoda from the Hokkaido. Part 2. Turrilites, Helicoceras, Heteroceras, Nipponites, Olcostephanus, Desmoceras, Hauericeras, and an undetermined genus.
- Journal of the College of Science, Imperial University of Tokyo, vol. 20, art. 2, pp. 1–45, pls. 1–6.
- Yabe, H., 1905:
- Mesozoic plants from Korea.
- Journal of the College of Science, Imperial University of Tokyo, vol. 20, art. 8, pp. 1–59, pls. 1–4.
-
- Yabe, H., 1908:
- On the occurrence of the genus Gigantopteris in Korea.
- Journal of the College of Science, Imperial University of Tokyo, vol. 23, art. 9, pp. 1–8, pl. 1.
-
- Yabe, H., 1910:
- Die Scaphiten aus der Oberkreide von Hokkaido.
- Beiträge zur Paläontologie und Geologie, Österreich-Ungarns und des Orients, Bd. 23, pp. 159–174, pl. 15.
-
- Yabe, H. and Shimizu, S., 1921:
- Notes on some Cretaceous ammonites from Japan and California.
- Science Reports of the Tohoku Imperial University, 2nd Series, vol. 5, no. 3, pp. 53–59, pls. 8–9.
-

- Yabumoto, Y., Sakamoto, Y. and Otsuka, H., 2005:
- Revision of the Pleistocene clupeid fish Clupanodon tanegashimaensis (Saheki, 1929) from Tanegashima, southwest Japan.
- Paleontological Research, vol. 9, no. 4, pp. 299–304.
-

- Yajima, M., 1978:
- Quaternary Ostracoda from Kisarazu near Tokyo.
- Transactions and Proceedings of the Palaeontological Society of Japan. New Series, no. 112, pp. 371–409, pls. 49–50.
-

- Yajima, M., 1982:
- Late Pleistocene Ostracoda from the Boso peninsula, central Japan. In: Hanai, T. (ed.) Studies on Japanese Ostracoda.
- The University Museum, The University of Tokyo, Bulletin, no. 20, pp. 141–227, pls. 10–15.
- Yajima, M., 1987:
- Pleistocene Ostracoda from the Atsumi peninsula, central Japan.
- Transactions and Proceedings of the Palaeontological Society of Japan. New Series, no. 146, pp. 49–76.
-

- Yajima, M., 1988:
- Preliminary notes on the Japanese Miocene Ostracoda.
- In: Hanai, T., Ikeya, N. and Ishizaki, K. (eds.)
Evolutionary biology on Ostracoda. Proceedings of the ninth international symposium on Ostracoda., pp. 1073–1085, pls. 1–2. Kodansha Ltd., Tokyo.
-
- Yajima, M., 1992a:
- Natural history of Trachyleberis scabrocuneata (Crustacea: Ostracoda) from Aburatsubo cove, Japan.
- Bulletin of Tokyo Seitoku College, no. 25, pp. 233–239, pl. 1. (in English with Japanese abstract)
-
- Yajima, M., 1992b:
- Early Miocene Ostracoda from Mizunami, central Japan.
- Bulletin of the Mizunami Fossil Museum, no. 19, pp. 247–267, pls. 29–32.
-
- Yajima, M. and Lord, A., 1990:
- The interpretation of Quaternary environments using Ostracoda: an example from Japan.
- Proceedings of the Geologists' Association, vol. 101, no. 2, pp. 153–161.
-
- Yamagishi, H., 2004:
- Elasmobranch remains from the Taho limestone (Lower-Middle Triassic) of Ehime Prefecture, southwest Japan.
- In: Arratia, G. and Tintori, A. (eds.)
Mesozoic fishes 3 — Systematics, paleoenvironments and biodiversity, pp. 565–574. Verlag Dr. Friedrich Pfeil, München, Germany.
-
- Yamagishi, H., 2009:
- Chondrichthyans.
- In: Shigeta, Y., Zakharov, Y. D. Maeda, H. and Popov, A. M. eds.
The Lower Triassic System in the Abrek Bay area, South Primorye, Russia.National Museum of Nature and Science Monographs, no. 38, pp. 196–202.
-
- Yamaguchi, T., 1973:
- On Megabalanus (Cirripedia, Thoracica) of Japan.
- Publications of the Seto Marine Biological Laboratory, vol. 21, no. 2, pp. 115–140, pls. 6–8.
-